PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676763026
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 286aa    MW: 31924.8 Da    PI: 7.6084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676763026genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043527123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC+ C ksF +   L  H+r+H
  676763026  5 HKCKLCWKSFVNGRALGGHMRSH 27
               79********************9 PP

2zf-C2H212.10.00059169191123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C k+F++   L  H  +H
  676763026 169 FECETCEKVFKSYQALGGHRASH 191
                89***********9999998887 PP

3zf-C2H213.40.00023224246123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+C k+Fs+   L  H r+H
  676763026 224 HECPICLKVFSSGQALGGHKRSH 246
                79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.09E-9427No hitNo description
PfamPF139121.4E-6528IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783532IPR007087Zinc finger, C2H2
SMARTSM003550.03527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576674.09E-9164191No hitNo description
PfamPF139125.5E-11169193IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.824169196IPR007087Zinc finger, C2H2
SMARTSM003550.087169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
PfamPF139121.2E-12224246IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432224247IPR007087Zinc finger, C2H2
SMARTSM003550.084224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEEKHKCKLC WKSFVNGRAL GGHMRSHMLH HPLPVQVEPA SSSKADPGSA LQDRESETES  60
SKNPTRKRSR LHRRSISVSL RHQKTSEEEE EDVEEESEAA AVKIVRDKTS HFLSELCTEQ  120
EPMSSVSDAE TAEEDVAFSL MMLSRDKWEK EGSHGEIRWD KKKEKKKWFE CETCEKVFKS  180
YQALGGHRAS HKKKRALEGS SSSSSSSCVI LESDEMTKKK GSSHECPICL KVFSSGQALG  240
GHKRSHATVT GLLGNSPAKR GNISFIDLNL PAPSEDEDLV SSIFAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418480.11e-112hypothetical protein EUTSA_v10009894mg
SwissprotQ390921e-108ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBLA0A087HKC11e-121A0A087HKC1_ARAAL; Uncharacterized protein
STRINGAT1G02030.11e-105(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.11e-89C2H2-like zinc finger protein